[PATCH] Update biopython to 1.66.

I also figure with the shiny new updaters it might make things easier if pypi is used instead of the biopython site. thanks. >From bb6e9ba482ea8602afafd9f6a310a8053544bd80 Mon Sep 17 00:00:00 2001 From: Ben Woodcroft Date: Wed, 11 Nov 2015 21:27:02 +1000 Subject: [PATCH] gnu: python-biopython,

Re: [PATCH] build: pull: Compile .scm files in one process.

l...@gnu.org (Ludovic Courtès) writes: > taylanbayi...@gmail.com (Taylan Ulrich "Bayırlı/Kammer") skribis: > >> compiling >> '/gnu/store/dbkpm8rqjz096w0bchmnlj8gw15q2riy-guix-latest/guix/scripts/environment.scm'... >> Backtrace: >> In ice-9/boot-9.scm: >> 2401: 19 [save-module-excursion #> ice-9/

[PATCH] Add r-devtools.

Hi Guix, here’s the second batch of R packages to give us “devtools”. I noticed that “git2r” contains *modified* sources of libgit2, so we cannot link it against libgit2 itself. The git2r README says this: The libgit2 library has been modified, e.g. to use the R printing and error routines,

Re: [PATCH] build: pull: Compile .scm files in one process.

taylanbayi...@gmail.com (Taylan Ulrich "Bayırlı/Kammer") skribis: > l...@gnu.org (Ludovic Courtès) writes: [...] >> (gnu scripts environment) imports (gnu packages bash), so we end up >> loading a big bunch of (gnu packages …) modules. >> >> The problem is that (gnu packages commencement) refers

GNU Guix 0.9.0 released

Congratulations!

Reproducible builds: a means to an end

Hello! I published a note on how I think reproducible builds fit in the bigger picture of user freedom and user autonomy, and what role Guix can play: https://savannah.gnu.org/forum/forum.php?forum_id=8407 Feedback welcome! Ludo’. signature.asc Description: PGP signature

Re: Weechat doesn't start

El lun, 09-11-2015 a las 16:56 +, Andy Wingo escribió: > On Mon 09 Nov 2015 16:27, Luis Felipe López Acevedo > writes: > > > I don't understand why is it looking for Python stuff in "/usr" instead > > of using my .guix-profile. Although "guix package -I" tells me Python is > > not installed.

python-matplotlib: should it propagate numpy?

Hi Guix, with a profile containing python-2.7.10 and python2-matplotlib I did this: [rwurmus@guix-builder:~] $ export GI_TYPELIB_PATH="$HOME/.guix-profile/lib/girepository-1.0" [rwurmus@guix-builder:~] $ export PYTHONPATH=$HOME/.guix-profile/lib/python2.7/site-packages

python-matplotlib: should it propagate numpy?

Ricardo Wurmus writes: > Hi Guix, > > with a profile containing python-2.7.10 and python2-matplotlib I did > this: > > > [rwurmus@guix-builder:~] $ export > GI_TYPELIB_PATH="$HOME/.guix-profile/lib/girepository-1.0" > [rwurmus@guix-builder:~] $ export > PYTHONPATH=$HOME/.

Re: guix/scripts/refresh.scm:331:14: warning: non-literal format string.

Mathieu Lirzin skribis: > Here is the snippet of the code producing this warning: > > (format (current-output-port) > (N_ (N_ "A single dependent package: ~2*~{~a~}~%" > "Building the following package would ensure ~d > \ > depend

Re: Change Log's style nitpicking!

Mathieu Lirzin skribis: > For example with: > > gnu: Add python-oslo.log. > * gnu/packages/openstack.scm (python-oslo.log, > python2-oslo.log): New variables. > > Change Log mode requires a parenthese as a first character with only a > tabulation before (no extra space) to fon

Re: [PATCH 2/5] gnu: Add evolution-data-server.

Alex Kost skribis: >> +(synopsis "Libraries and services for storing addressbooks and >> calendars") > > I think it's better to use "address books". Yes. It could even be simply: “Store address books and calendars.” Ludo’.

Re: [PATCH 1/5] gnu: Add gnome-online-accounts.

宋文武 skribis: > * gnu/packages/gnome.scm (gnome-online-accounts): New variable. LGTM. Ludo'.

Re: [PATCH 3/5] gnu: Add caribou.

宋文武 skribis: > * gnu/packages/gnome.scm (caribou): New variable. LGTM, thanks. Ludo’.

Re: [PATCH 4/5] gnu: Add gdm.

宋文武 skribis: > * gnu/packages/gnome.scm (gdm): New variable. [...] > + '(#:configure-flags > + '("--without-plymouth") Should be on a single line. > + (modify-phases %standard-phases > + (add-before > + 'configure 'pre-configure Could use the indentation sugg

Re: [PATCH 5/5] gnu: Add gnome-shell.

iyzs...@member.fsf.org (宋文武) skribis: > WIP, gdm and gnome-shell won't start. > > I haven't look much about gdm. > > gnome-shell still missing some runtime depends (as typelib) like > network-manager, etc. > > I post those patches to ML to track the process, let's package GNOME :-) Ah OK, makes s

Re: [PATCH] Add microscheme.

Ricardo Wurmus skribis: > Ludovic Courtès writes: > >>> From 1900f3015162cc777ee79883a0cae2a21216d99c Mon Sep 17 00:00:00 2001 >>> From: Ricardo Wurmus >>> Date: Fri, 6 Nov 2015 22:37:40 +0100 >>> Subject: [PATCH 2/2] gnu: Add microscheme. >>> >>> * gnu/packages/avr.scm (microscheme): New varia

Re: [PATCH 2/5] gnu: Build lua-5.2 with dynamic library support.

Leo Famulari skribis: > On Sun, Nov 8, 2015, at 16:08, Ludovic Courtès wrote: >> Leo Famulari skribis: [...] >> How can I test whether this works as expected? I tried this, but I’m >> unsure whether it’s supposed to load OpenSSL’s libssl.so directly or >> not: > > There is a Lua library named

Re: [bug-womb] Texinfo markup in package blurbs

Hey Brandon, Brandon Invergo skribis: >> Guix has gained the possibility to have Texinfo markup in package >> descriptions¹, which is properly rendered by user interfaces and at >> .  Often we just limit >> ourselves to ornaments such as @dfn, @code,

Re: [PATCH] edit: Friendlier error message.

Mathieu Lirzin skribis: > l...@gnu.org (Ludovic Courtès) writes: > >> Andreas Enge skribis: >> >>> On Thu, Nov 05, 2015 at 12:08:35PM +0100, Ludovic Courtès wrote: > +(unless (search-path (parse-path (getenv "PATH")) (%editor)) > + (leave (_ "Couldn't find editor '~a'. Please

emacs.scm: Suggest add emacs-next or emacs-snapshot

Suggest add emacs-next or emacs-snapshot and let guile-emacs inherit it, The reason is that user can use it build emacs from emacs.git conveniently， for example: guix build emacs-snapshot --with-source=./emacs-snapshot-2015.tar.gz

The problem of "guix build emacs --with-source=./emacs"

When I use the below command to build emacs from emacs.git guix build emacs --with-source=./emacs (emacs dir is git repo) Build fail, after i remove the .git, build success. The repo of emacs.git is 1.5G, is it the reason?

[PATCH] tk: Hardcode path to TK_LIBRARY.

I did it for nixpkgs too :-)From 6c9ea521e88d36bd1ce990a561477ec0e2950017 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?=E5=AE=8B=E6=96=87=E6=AD=A6?= Date: Thu, 12 Nov 2015 13:31:19 +0800 Subject: [PATCH] tk: Hardcode path to TK_LIBRARY. Fixes . * gnu/packages/patches/tk-f