Re: Installing guix packages without root permissions (in HPC environments)

Relocatable guix in action: https://github.com/lomereiter/sambamba/issues/219

[PATCH] import: pypi: Don't add setuptools to propagated-inputs.

The pypi importer currently adds python-setuptools to the propagated inputs. According to the manual we don't need to do this any more, so here's a patch that updates the importer to match. From d819fce415614d269fbb28f035963e6e0d6efbee Mon Sep 17 00:00:00 2001 From: Carlo Zancanaro Date: Sat, 21

[PATCH 3/4] gnu: Add python2-slowaes

* gnu/packages/python.scm (python2-slowaes): New variable. --- gnu/packages/python.scm | 21 + 1 file changed, 21 insertions(+) diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 0ee1b6ef8..ad62c25e8 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/pyt

[PATCH 2/4] gnu: Add python-qrcode.

* gnu/packages/python.scm (python-qrcode, python2-qrcode): New variables. --- gnu/packages/python.scm | 25 + 1 file changed, 25 insertions(+) diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 21347b25e..0ee1b6ef8 100644 --- a/gnu/packages/python.scm +++

[PATCH 1/4] gnu: Add python-pbkdf2.

* gnu/packages/python.scm (python-pbkdf2, python2-pbkdf2): New variables. --- gnu/packages/python.scm | 29 + 1 file changed, 29 insertions(+) diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 6a5b0c4f1..21347b25e 100644 --- a/gnu/packages/python.scm

Re: jquery 3.1.1

On Fri, Jan 20, 2017 at 22:14:42 +0100, Ludovic Courtès wrote: > (One could argue that single-function packages are “trivial” from a > copyright standpoint. Then the subset of the npm repo containing those > trivial packages could be viewed as a database of “facts” (which, in > some jurisdiction,

Create a symlink /usr/bin/env by default in GuixSD?

/bin/sh is often used in shebangs. I guess that's why GuixSD by default creates that symlink which points to /gnu/store/HASH-bash-VERSION/bin/sh which again is a symlink pointing to /gnu/store/HASH-bash-VERSION/bin/bash. /usr/bin/env is also used very often in shebangs. Wouldn't it make sense to a

Re: [PATCH] gnu: Add kakoune

Let's give this another try, then. I think I've taken into account all your feedback, and I've updated to a more recent kakoune commit. From a15396f186d5a88f7fbe1af21add9bbd40ddc59b Mon Sep 17 00:00:00 2001 From: Carlo Zancanaro Date: Fri, 30 Dec 2016 02:15:59 +1100 Subject: [PATCH] gnu: Add kak

Re: pre-push signature hook error reporting [was Re: [PATCH v6] gnu: python-sphinx: Update to 1.4.8.]

On Fri, Jan 20, 2017 at 03:05:42PM +0100, Ludovic Courtès wrote: > For the pre-push hook, the overhead seems reasonable (perhaps we could > limit the range to commits after the first signed commit to avoid > looping for no reason?) and an improvement. I agree that it's reasonable and an improvemen

Re: [PATCH] Update gd and php

On Fri, Jan 20, 2017 at 10:25:40PM +0100, Ludovic Courtès wrote: > Leo Famulari skribis: > If gd-for-php has #f as its replacement, then nothing will be grafted to > replace it. > > Or am I missing something? No, I am the one missing something. I built PHP (sans tests) and it does refer to gd-2.

Re: [PATCH] gnu: whois: Move mkpasswd to its own output.

Ludovic Courtès writes: > ng0 skribis: > >> Ludovic Courtès writes: >> >>> Hey, >>> >>> ng0 skribis: >>> Mkpasswd has nothing to do with whois, and upstream says so. I think we should be able to install whois and just have whois, not some random "historical bundled" binary in ad

Re: jquery 3.1.1

2017-01-20 22:23 GMT+01:00 Ludovic Courtès : > Hi! > > Catonano skribis: > > > I made a crawler and I let it loose on the jquery 3.1.1 dependencies on > > registry.npmjs.com > > > > It recursevely fetched the dependencies of jquery 3.1.1, then the > > dependencies of the dependencies, then the de

[PATCH] gnu: Add opencascade-oce

* gnu/packages/maths.scm: Add it --- gnu/packages/maths.scm | 49 + 1 file changed, 49 insertions(+) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 313f6ac..62415e7 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm

Ideas for Summer of Code 2017

Hello, GNU is applying as an organization for Google Summer of Code 2017. So this is time to start gathering ideas for possible Guix/Shepherd related projects. I have created a page based on the one from last year: https://libreplanet.org/wiki/Group:Guix/GSoC-2017 It's a Wiki, so feel free t

Re: [PATCH 06/16] gnu: Add r-raremetals2.

Ricardo Wurmus skribis: > Ludovic Courtès writes: > >> Ricardo Wurmus skribis: >> >>> * gnu/packages/bioinformatics.scm (r-raremetals2): New variable. >> >> [...] >> >>> +(home-page "http://genome.sph.umich.edu/wiki/RareMETALS2";) >>> +(synopsis "Analyze gene-level association tests for

Re: [PATCH] Update gd and php

Leo Famulari skribis: > On Fri, Jan 20, 2017 at 05:12:46PM +0100, julien lepiller wrote: >> How do you make php use gd-2.2.4, then? It needs to be updated too because >> the security issues with gd are still present in our current php package. > > It seems that gd-for-php gets replaced by gd-2.2.

Re: jquery 3.1.1

Hi! Catonano skribis: > I made a crawler and I let it loose on the jquery 3.1.1 dependencies on > registry.npmjs.com > > It recursevely fetched the dependencies of jquery 3.1.1, then the > dependencies of the dependencies, then the dependencies of the dependencies > of the dependencies... and so

Re: jquery 3.1.1

Hey, Mike Gerwitz skribis: > On Thu, Jan 19, 2017 at 21:48:44 +0100, Catonano wrote: >> Anyway, now I have a COMPLETE graph of the dependencies of jquery 3.1.1 >> >> It's made of >> 47311 vertices and >> 324569 edges > > lol... > >> Anyway, these broken packages pose a challenge to the mission o

Re: [PATCH 01/35] gnu: Add r-cowplot.

Hi Raoul! I think it’s the first time a newcomer says “hello” with a 35-patch series, congrats on that. :-) To facilitate the process, can you confirm that you ran ‘guix lint’ on the packages and generally followed ? At

Re: Shadow -> 4.4

Leo Famulari skribis: > On Thu, Jan 19, 2017 at 08:06:34PM +, contact@cryptolab.net wrote: >> Question: I don't prefer to crash and burn systems, which test is >> enough to show that it works? Reconfiguring one of my own systems? > > Yes. If it breaks your system, you can always reboot in

Re: gnu: gnutls: Add gnutls-3.5.5 and gnutls-with-guile-next.

Hello! Christopher Allan Webber skribis: > Hello! I was talking in #guile and realized that even though guile-next > now includes glorious https support via gnutls, few have tried it or > know how to use it. > > It turns out you need a specially packaged version of gnutls! Or, > specially pack

'python-tests' merge

>> I wonder if we should update scipy and numpy while at it. Thoughts? > > Ugh. I tried this out (plus matplotlib), but the latest matplotlib > (2.0.0) has a circular dependency on ipython. Great. > > The motivation is that the scipy failure stems from the Sphinx update. > I think I'll add an olde

Re:Re: [PATCH] Add fcitx-configtool

tumashu writes: > yes, it workswell for me Thanks for confirming, pushed as 7386a0481c26d6 ! signature.asc Description: PGP signature

[PATCH] gnu: add geos

* gnu/packages/geo.scm (geos): New variable. --- gnu/packages/geo.scm | 34 ++ 1 file changed, 34 insertions(+) diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm index 797b9ea30..75fde2752 100644 --- a/gnu/packages/geo.scm +++ b/gnu/packages/geo.scm @@ -32,

Re: gnu: abbaye: Update to 2.0.1 from new repository.

Adonay Felipe Nogueira (2017-01-15 11:48 -0200) wrote: > After so much wait, we got L'Abbaye des Morts game out of Google > Code. :) > > I had to remove the bundled fonts because they no longer use these > directly in the game. It seems to be in their repository just because > they don't want to l

Re: [PATCH] Update gd and php

On Fri, Jan 20, 2017 at 05:12:46PM +0100, julien lepiller wrote: > How do you make php use gd-2.2.4, then? It needs to be updated too because > the security issues with gd are still present in our current php package. It seems that gd-for-php gets replaced by gd-2.2.4 now: $ ./pre-inst-env guix b

Re: [PATCH] Update gd and php

Le 2017-01-20 16:33, Leo Famulari a écrit : On Fri, Jan 20, 2017 at 12:53:19AM -0500, Leo Famulari wrote: And I think that PHP's use of libgd should be updated in the same commit. Otherwise, after patch 1/2, PHP would require a gd-for-php with patches that would fail to apply, leaving PHP brok

Re: Install FAQ: Only build the non-deterministic packages?

On Fri, Jan 13, 2017 at 02:14:24PM +0100, Ludovic Courtès wrote: > Hello! Hej Ludó! > The problem is that you never know whether a package is reproducible. I see the philosophical debate you had at the summit, but I think most users would be fine with something pragmatic that *improves* the prob

Re: [PATCH] Update gd and php

On Fri, Jan 20, 2017 at 12:53:19AM -0500, Leo Famulari wrote: > And I think that PHP's use of libgd should be updated in the same > commit. Otherwise, after patch 1/2, PHP would require a gd-for-php with > patches that would fail to apply, leaving PHP broken for that commit. I made a "thinko" here

Re: [PATCH 1/1] gnu: gd: Replace with gd-2.2.4 [fixes CVE-2016-{6912, 9317} and others].

On Fri, Jan 20, 2017 at 02:49:50PM +0100, Ludovic Courtès wrote: > Leo Famulari skribis: > > (define-public php > >(package > > (name "php") > > @@ -291,7 +280,7 @@ > > ("curl" ,curl) > > ("cyrus-sasl" ,cyrus-sasl) > > ("freetype" ,freetype) > > - ("gd" ,gd-

Re: [PATCH] gnu: whois: Move mkpasswd to its own output.

ng0 writes: >> I might be overlooking something, but my gut reaction is that (1) it’s >> not “bundling” in that we don’t have any other package providing >> mkpasswd, and (2) it’s up to upstream to decide whether or not to >> distribute mkpasswd. >> >> WDYT? >> >> Ludo’. >> > And upstreams decis

Re: [PATCH 2/2] services: network-manager: Use record for configuration.

Christopher Baines writes: > 宋文武 writes: > >> Christopher Baines writes: >> >>> * gnu/services/network-manager.scm (): New >>> record type. >>> (network-manager-shpeherd-service): Change to use the >>> network-manager-configuration record, rather than a package. Generate a >>> simple configura

Re: [PATCH] gnu: Add ldc-1.1.0-beta6

Frederick Muriithi skribis: > On 19 Jan 2017 3:47 p.m., "Ludovic Courtès" wrote: > > ... However, on my x86_64 machine, the build fails with: > --8<---cut here---start->8--- > 99% tests passed, 1 tests failed out of 751 > > Total Test time (real) = 2134.61

Re: [PATCH 06/16] gnu: Add r-raremetals2.

Ludovic Courtès writes: > Ricardo Wurmus skribis: > >> * gnu/packages/bioinformatics.scm (r-raremetals2): New variable. > > [...] > >> +(home-page "http://genome.sph.umich.edu/wiki/RareMETALS2";) >> +(synopsis "Analyze gene-level association tests for binary trait") >> +(description

Re: [PATCH 2/2] gnu: Add openvpn service.

Alex Kost skribis: > Ludovic Courtès (2017-01-19 12:51 +0100) wrote: [...] >> The problem is that people using indent-code.el typically have raw Emacs >> with scheme-mode, but most likely without Geiser and Emacs-Guix. So we >> need a mechanism that works in that case. > > ... I see 2 ways: >

Re: A postinst equivalent in Guix?

Hi, Georgi Kirilov skribis: > is there anything in Guix that can do things at install time, like postinst > scripts in Debian? No. There are “profile hooks” in (guix profiles) that are used to a similar effect, for instance to assemble the ‘dir’ file that contains pointers to Info documentatio

Re: [PATCH 3/4] gnu: Add kdev-python.

Thomas Danckaert skribis: >> process 1051: D-Bus library appears to be incorrectly set up; failed >> to read machine uuid: Failed to open "/etc/machine-id": No such file >> or directory See the manual page for dbus-uuidgen to correct this >> issue. >> >> D-Bus not built with -rdynamic so unable

Re: pre-push signature hook error reporting [was Re: [PATCH v6] gnu: python-sphinx: Update to 1.4.8.]

Leo Famulari skribis: > On Fri, Jan 13, 2017 at 10:24:00AM -0500, Leo Famulari wrote: >> I bet that you are using the new pre-push hook that verifies commit >> signatures, and you're trying to push some commits that fail the >> signature verification check. >> >> Someone should add some error re

Re: [PATCH] gnu: whois: Move mkpasswd to its own output.

ng0 skribis: > Ludovic Courtès writes: > >> Hey, >> >> ng0 skribis: >> >>> Mkpasswd has nothing to do with whois, and upstream says so. I >>> think we should be able to install whois and just have whois, not >>> some random "historical bundled" binary in addition to whois. >>> I'm just stating

Re: [PATCH 1/1] gnu: gd: Replace with gd-2.2.4 [fixes CVE-2016-{6912, 9317} and others].

Leo Famulari skribis: > 'CHANGELOG.md' in the development repository lists several fixed bugs with > potential security implications: > > https://github.com/libgd/libgd/blob/gd-2.2.4/CHANGELOG.md > > * gnu/packages/gd.scm (gd)[replacement]: New field. > (gd-2.2.4): New variable. > * gnu/packages/

Re: [PATCH] gnu: Add lsyncd.

Ricardo Wurmus skribis: > * gnu/packages/sync.scm (lsyncd): New variable. LGTM, thanks!

Re: [PATCH 1/2] gnu: tlsdate: Use the system provided certificate store.

ng0 skribis: > Ludovic Courtès writes: > >> ng0 skribis: >> >>> Ludovic Courtès writes: >>> Hello! ng0 skribis: > * gnu/packages/ntp.scm (tlsdate)[arguments]: Configure with unprivileged > user and group. > [arguments]: Build with the system provided certifica

Re: FOSDEM social dinner

Hello, To confirm, I've now placed a reservation for Saturday 4 February at 19:30 at a Lebanese restaurant called Al Jannah. I haven't been there before, but the menu looks diverse, the prices good and the location relatively central. https://www.tripadvisor.com/Restaurant_Review-g188644-d203955

Re: [PATCH 15/16] gnu: Add r-msnbase.

Ricardo Wurmus skribis: > * gnu/packages/bioinformatics.scm (r-msnbase): New variable. [...] > +(synopsis "Base functions and classes for MS-based proteomics") > +(description > + "This package provides basic plotting, data manipulation and processing > +of MS-based proteomics data.

Re: Systemd error on symlink

Am 20.01.2017 um 14:07 schrieb Leo Famulari: > Did somebody send a patch yet? I thought, you did?! -- Regards Hartmut Goebel | Hartmut Goebel | h.goe...@crazy-compilers.com | | www.crazy-compilers.com | compilers which you thought are impossible |

Re: [PATCH 09/10] gnu: Add ocaml-js-build-tools.

Marius Bakke skribis: >> --- /dev/null >> +++ b/gnu/packages/patches/ocaml-janestreet-fix-libdir.patch >> @@ -0,0 +1,36 @@ >> +diff -aur package.pristine/Makefile package.new/Makefile >> +--- package.pristine/Makefile 2016-02-06 01:55:14.650150309 +0100 >> package.new/Makefile2016-

Re: [PATCH 06/16] gnu: Add r-raremetals2.

Ricardo Wurmus skribis: > * gnu/packages/bioinformatics.scm (r-raremetals2): New variable. [...] > +(home-page "http://genome.sph.umich.edu/wiki/RareMETALS2";) > +(synopsis "Analyze gene-level association tests for binary trait") > +(description > + "The R package rareMETALS2 is

Re: [PATCH] gnu: Add nyx.

contact@cryptolab.net skribis: > From: ng0 > > * gnu/packages/tor.scm (nyx): New variable. I applied the changes below and then realized that it fails to build: --8<---cut here---start->8--- starting phase `install' running install running build running b

Re: Services: gnunet. (require help)

contact@cryptolab.net skribis: > I've been changing this service back and forth and back again, now > running on one computer, and leaving aside all confusion you will see > in there, gnunet needs at least a .config/gnunet file, the rest should > be automatically created. unless it isn't, whic

Re: [PATCH 15/16] gnu: Add r-msnbase.

I quickly looked at the other patches in the series and didn’t notice anything particular. I’d say go ahead! Ludo’.

Re: Systemd error on symlink

On Fri, Jan 20, 2017 at 12:31:35PM +0100, Hartmut Goebel wrote: > Am 20.01.2017 um 11:22 schrieb Pjotr Prins: > > will throw an error. The solution is not to symlink but to copy the service > > file. > > There is already a patch pending to change the manual, see > http://lists.gnu.org/archive/htm

Re: [PATCH] gnu: whois: Move mkpasswd to its own output.

Am 20.01.2017 um 11:41 schrieb ng0: > I'm still in favor for making it separate guix packages. +1 -- Regards Hartmut Goebel | Hartmut Goebel | h.goe...@crazy-compilers.com | | www.crazy-compilers.com | compilers which you thought are impossible |

Re: Systemd error on symlink

Am 20.01.2017 um 11:22 schrieb Pjotr Prins: > will throw an error. The solution is not to symlink but to copy the service > file. There is already a patch pending to change the manual, see http://lists.gnu.org/archive/html/guix-devel/2017-01/msg01199.html -- Regards Hartmut Goebel | Hartmut Go

[PATCH] gnu: Add compton.

--José Miguel Sánchez García 0001-gnu-Add-compton.patch Description: Binary data

Re: Systemd error on symlink

Pjotr Prins writes: > Following the manual: > > If your host distro uses the systemd init system, this can be achieved with > these commands: > > # ln -s ~root/.guix-profile/lib/systemd/system/guix-daemon.service \ > /etc/systemd/system/ > # systemctl start guix-daemon && systemct

Re: Shadow -> 4.4

Leo Famulari writes: > On Thu, Jan 19, 2017 at 08:06:34PM +, contact@cryptolab.net wrote: >> Question: I don't prefer to crash and burn systems, which test is >> enough to show that it works? Reconfiguring one of my own systems? > > Yes. If it breaks your system, you can always reboot int

Re: [PATCH] gnu: whois: Move mkpasswd to its own output.

Ludovic Courtès writes: > Hey, > > ng0 skribis: > >> Mkpasswd has nothing to do with whois, and upstream says so. I >> think we should be able to install whois and just have whois, not >> some random "historical bundled" binary in addition to whois. >> I'm just stating the sizes as in comparison

Systemd error on symlink

Following the manual: If your host distro uses the systemd init system, this can be achieved with these commands: # ln -s ~root/.guix-profile/lib/systemd/system/guix-daemon.service \ /etc/systemd/system/ # systemctl start guix-daemon && systemctl enable guix-daemon will throw an e

Re: [PATCH 2/2] services: network-manager: Use record for configuration.

宋文武 writes: > Christopher Baines writes: > >> * gnu/services/network-manager.scm (): New >> record type. >> (network-manager-shpeherd-service): Change to use the >> network-manager-configuration record, rather than a package. Generate a >> simple configuration file from the network-manager-conf

[PATCH] services: network-manager: Use record for configuration.

* gnu/services/network-manager.scm (): New record type. (network-manager-shpeherd-service): Change to use the network-manager-configuration record, rather than a package. Generate a simple configuration file from the network-manager-configuration record. (network-manager-service-type): Update exte