And ACPYPE does (besides several others improvements)
Alan
On 9 October 2013 15:24, xiao wrote:
> Hi Alan,
>
> Thank you very much! The problem is solved. The reason is that amb2gmx
> cannot distinguish the proper and improper dihedrals.
>
> Best wishes
>
> Fugui
>
>
>
>
> At 2013-10-09 21:58:
Hi, try ACPYPE.
Alan
On 9 October 2013 14:07, xiao wrote:
> Dear all,
>
> I am doing membrane protein simulation by using amber force field. The
> lipid force field parameters are from the lipid11.dat from Amber. Firstly,
> i got the xx.prmtop and xx.prmcrd files, and then i used amb2gmx.pl to
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