Hi, try ACPYPE. Alan
On 9 October 2013 14:07, xiao <helitr...@126.com> wrote: > Dear all, > > I am doing membrane protein simulation by using amber force field. The > lipid force field parameters are from the lipid11.dat from Amber. Firstly, > i got the xx.prmtop and xx.prmcrd files, and then i used amb2gmx.pl to > convert the xx.prmtop and xx.prmcrd files into gromacs files xx.top and > xx.gro files. However, i found there is some problem with the xx.top files. > For example, there are two dihedral parameters, and they should be same, > but in the xx.top file (gromacs form) ,they are different. I have no idea > where the problem is from. > Any information is appreciated! > > Fugui > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- Alan Wilter SOUSA da SILVA, DSc Bioinformatician, UniProt European Bioinformatics Institute (EMBL-EBI) European Molecular Biology Laboratory Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD United Kingdom Tel: +44 (0)1223 494588 -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
