Nidhi Katyal wrote:
Thank you for your reply.I was able to create isodensity surface but can
i color my protein surface according to the difference in flexibility
of the backbone caused by addition of some molecule and also know
addition of which molecules.Please help.
There are various
You can load your gromacs trajectory file in VMD 1.9 and then use Volume-map
tool in the "analysis" section to calculate the isodensity surface. The GUI of
the Volume-map tool is pretty user-friendly.
From: Nidhi Katyal
To: gmx-users@gromacs.org
Sent: Satur
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