You can load your gromacs trajectory file in VMD 1.9 and then use Volume-map
tool in the "analysis" section to calculate the isodensity surface. The GUI of
the Volume-map tool is pretty user-friendly.
________________________________
From: Nidhi Katyal <nidhikatyal1...@gmail.com>
To: gmx-users@gromacs.org
Sent: Saturday, January 28, 2012 11:56 AM
Subject: [gmx-users] isodensity surface
Dear all,
Is there a way to create and visualize isodensity surfaces in Gromacs or any
tool which can work on gromacs compatible file?
Any suggestion would be highly welcomed.
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