Re: [gmx-users] Poor exchange probability for REMD

2011-11-21 Thread Ben Reynwar
rease the upper limit of the temperature range for REMD. >   Meanwhile, anther question, what's the proper range for the exchange > probability?  Does the high exchange probability impair the properties we > want to observe or just a waste of computational resources? >   Best re

Re: [gmx-users] Poor exchange probability for REMD

2011-11-19 Thread David van der Spoel
ion, what's the proper range for the exchange probability? Does the high exchange probability impair the properties we want to observe or just a waste of computational resources? Best regards! Xiangqian Kong --- On Sat, 11/19/11, Mark Abraham wrote: From: Mark Abraham Subject:

Re: [gmx-users] Poor exchange probability for REMD

2011-11-19 Thread ÏéÇ« ¿×
probability? Does the high exchange probability impair the properties we want to observe or just a waste of computational resources? Best regards! Xiangqian Kong --- On Sat, 11/19/11, Mark Abraham wrote: > From: Mark Abraham > Subject: Re: [gmx-users] Poor exchange probability for

Re: [gmx-users] Poor exchange probability for REMD

2011-11-18 Thread Mark Abraham
On 18/11/2011 12:43 PM, ÏéÇ« ¿× wrote: Dear GMX users, Recently i am performing the REMD simulation with Gromacs program and the temperature distribution for each replica was predicted with the server "http://folding.bmc.uu.se/remd/";. However, after a 2-ns short test simulation with 64 re