Re: [gmx-users] How to calculate total enery of a protein

2007-11-04 Thread Mark Abraham
[EMAIL PROTECTED] wrote: Hi, I am new to gromacs, I wold like to calculate the total energy of a protein molecule, in other words i have pdb structures what is the energy of this molecule? Is there any option to in GROMACS to do this. Yes, but a single total energy doesn't mean anything. It's l

Re: [gmx-users] How to calculate total enery of a protein

2007-11-04 Thread David van der Spoel
[EMAIL PROTECTED] wrote: Hi, I am new to gromacs, I wold like to calculate the total energy of a protein molecule, in other words i have pdb structures what is the energy of this molecule? Is there any option to in GROMACS to do this. What kind of energy? You can not compute things like heat o