[EMAIL PROTECTED] wrote:
Hi,
I am new to gromacs, I wold like to calculate the total energy of a
protein molecule, in other words i have pdb structures what is the energy
of this molecule? Is there any option to in GROMACS to do this.
Yes, but a single total energy doesn't mean anything. It's like me
telling you that there's a single rock in the Himalayas that has
gravitational potential energy of -10.234 megajoules.
It sounds like you might need to do some background textbook reading on
molecular simulations and computational chemistry in general :-)
Mark
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