Re: [gmx-users]Question about reduced unit for coarse grain

2011-06-22 Thread Ye Yang
Thank you very much! I will check with them carefully. Ye 2011/6/23 Justin A. Lemkul > > > Ye Yang wrote: > >> Just no reply from them for some time... >> > > Well, that's unfortunate. I'd hazard a guess that all the units are > reduced, but that's just a hunch. Theoretically, all your input

Re: [gmx-users]Question about reduced unit for coarse grain

2011-06-22 Thread Justin A. Lemkul
Ye Yang wrote: Just no reply from them for some time... Well, that's unfortunate. I'd hazard a guess that all the units are reduced, but that's just a hunch. Theoretically, all your input and output should be in reduced units. My hunch is based on the fact that everything shown (in term

Re: [gmx-users]Question about reduced unit for coarse grain

2011-06-22 Thread Ye Yang
Just no reply from them for some time... Thank you anyway. Ye 2011/6/22 Justin A. Lemkul > > > Ye Yang wrote: > >> Thank you very much, Mark. >> >> Is there anyway I can know the unit of input from the top file? I am not >> sure what I am getting from the webtool, although it shows "kj/mol" the

Re: [gmx-users]Question about reduced unit for coarse grain

2011-06-22 Thread Justin A. Lemkul
Ye Yang wrote: Thank you very much, Mark. Is there anyway I can know the unit of input from the top file? I am not sure what I am getting from the webtool, although it shows "kj/mol" the instruction on the web says the unit is reduced unit, which makes me confused. In the former case I do n

Re: [gmx-users]Question about reduced unit for coarse grain

2011-06-22 Thread Ye Yang
Thank you very much, Mark. Is there anyway I can know the unit of input from the top file? I am not sure what I am getting from the webtool, although it shows "kj/mol" the instruction on the web says the unit is reduced unit, which makes me confused. In the former case I do not need to convert, bu

Re: [gmx-users]Question about reduced unit for coarse grain

2011-06-22 Thread Mark Abraham
On 23/06/2011 10:36 AM, Ye Yang wrote: Hi, Thanks for replying, Yang. But I still did not get it fully: 1. So if we use reduced unit in input, the output and calculation is still assumed to be in standard units? The calculation uses the same algorithm and whatever values you input.

Re: [gmx-users]Question about reduced unit for coarse grain

2011-06-22 Thread Ye Yang
Hi, Thanks for replying, Yang. But I still did not get it fully: 1. So if we use reduced unit in input, the output and calculation is still assumed to be in standard units? But the calculation itself is different since the constants are different, so the result must differed a lot. Does

Re: [gmx-users]Question about reduced unit for coarse grain

2011-06-22 Thread Yang Ye
Hi, The unit in output is in assumed to be for the standard unit input while the value is in reduced unit. So you need to do your own calculation to figure out what's the reduced unit is. Regards, Yang Ye On Thu, Jun 23, 2011 at 5:48 AM, Ye Yang wrote: > Dear all: > I see from the use

[gmx-users]Question about reduced unit for coarse grain

2011-06-22 Thread Ye Yang
Dear all: I see from the user's manual that if our input is in reduced unit, the output will also be in reduced unit(, ftp://ftp.gromacs.org/pub/manual/3.1/manual-a4-3.1.1.pdf), P25. On the contrary, if we use standard unit, the out put will be in standard unit. This brings the que

[gmx-users]Question about reduced unit for coarse grain

2011-06-22 Thread Ye Yang
Dear all: I see from the user's manual that if our input is in reduced unit, the output will also be in reduced unit(, ftp://ftp.gromacs.org/pub/manual/3.1/manual-a4-3.1.1.pdf), P25. On the contrary, if we use standard unit, the out put will be in standard unit. This brings the que