Re: [gmx-users] mdrun -v output

2012-06-18 Thread Chandan Choudhury
Thanks Peter for the clarification. Chandan -- Chandan kumar Choudhury NCL, Pune INDIA On Tue, Jun 19, 2012 at 2:27 AM, Peter C. Lai wrote: > It actually depends on your shell/environment :-P > > On sun grid engine and derivatives, the you can have the scheduler capture > the stdout and stder

Re: [gmx-users] mdrun -v output

2012-06-18 Thread Peter C. Lai
It actually depends on your shell/environment :-P On sun grid engine and derivatives, the you can have the scheduler capture the stdout and stderr output through the -o and -e parameters, respectively. On 2012-06-18 05:28:11PM +0530, Chandan Choudhury wrote: > On Mon, Jun 18, 2012 at 12:43 PM, Ja

Re: [gmx-users] mdrun -v output

2012-06-18 Thread Chandan Choudhury
On Mon, Jun 18, 2012 at 12:43 PM, Javier Cerezo wrote: > Information messages, such as those shown on the screen during mdrun are > output to stderr. So if you want to get them you should redirect as follows: > > mdrun -v -s md.tpr 2> verbose.txt > > In the case where you may need to get all out

Re: [gmx-users] mdrun -v output

2012-06-18 Thread Javier Cerezo
Information messages, such as those shown on the screen during mdrun are output to stderr. So if you want to get them you should redirect as follows: mdrun -v -s md.tpr 2> verbose.txt In the case where you may need to get all output (from both stdout and stderr) you should use: mdrun -v -s m

[gmx-users] mdrun -v output

2012-06-17 Thread Chandan Choudhury
Dear gmx users, Is it possible to redirect the output of mdrun -v to a file while submitting the job using pbs script? mdrun -v -s md.tpr > verbose.txt donot produce output (to file verbose.txt) while the job is running. Chandan -- Chandan kumar Choudhury NCL, Pune INDIA -- gmx-users mailing l