It actually depends on your shell/environment :-P On sun grid engine and derivatives, the you can have the scheduler capture the stdout and stderr output through the -o and -e parameters, respectively.
On 2012-06-18 05:28:11PM +0530, Chandan Choudhury wrote: > On Mon, Jun 18, 2012 at 12:43 PM, Javier Cerezo <j...@um.es> wrote: > > > Information messages, such as those shown on the screen during mdrun are > > output to stderr. So if you want to get them you should redirect as follows: > > > > mdrun -v -s md.tpr 2> verbose.txt > > > > In the case where you may need to get all output (from both stdout and > > stderr) you should use: > > > > mdrun -v -s md.tpr &> verbose.txt > > > > Thanks. It is actually mdrun -v -s md.tpr >& verbose.txt > > > > > Javier > > > > El 18/06/12 08:49, Chandan Choudhury escribió: > > > > > > Dear gmx users, > > > > Is it possible to redirect the output of mdrun -v to a file while > > submitting the job using pbs script? > > mdrun -v -s md.tpr > verbose.txt > > donot produce output (to file verbose.txt) while the job is running. > > > > Chandan > > > > -- > > Chandan kumar Choudhury > > NCL, Pune > > INDIA > > > > > > > > -- > > Javier CEREZO BASTIDA > > PhD Student > > Physical Chemistry > > Universidad de Murcia > > Murcia (Spain) > > Tel: (+34)868887434 > > > > -- > > gmx-users mailing list gmx-users@gromacs.org > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > Please search the archive at > > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > Please don't post (un)subscribe requests to the list. Use the > > www interface or send it to gmx-users-requ...@gromacs.org. > > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- ================================================================== Peter C. Lai | University of Alabama-Birmingham Programmer/Analyst | KAUL 752A Genetics, Div. of Research | 705 South 20th Street p...@uab.edu | Birmingham AL 35294-4461 (205) 690-0808 | ================================================================== -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
