Re: [gmx-users] box vectors - regd

2012-08-16 Thread ramesh cheerla
Dear Mark, Once again I am very thankful to you for your reply, I have extracted box vectors from .XTC file by using g_traj with -ob option with this I was able to get only six vector components viz XX YY ZZ YX ZX and ZY only how about remaining three vector components XY XZ a

Re: [gmx-users] box vectors - regd

2012-08-15 Thread Mark Abraham
On 16/08/2012 3:22 PM, ramesh cheerla wrote: Dear Mark, Thank you for your reply, as you suggested I will go through the sec 7.4 and 8 of the manual and moreover how would I get exact box vectors XX YY ZZ XY XZ YX YZ ZX ZY for each frame of trajectory in gromacs They're in the

Re: [gmx-users] box vectors - regd

2012-08-15 Thread ramesh cheerla
Dear Mark, Thank you for your reply, as you suggested I will go through the sec 7.4 and 8 of the manual and moreover how would I get exact box vectors XX YY ZZ XY XZ YX YZ ZX ZY for each frame of trajectory in gromacs As I am new to gromacs I have no Idea where these will be stored

Re: [gmx-users] box vectors - regd

2012-08-15 Thread Mark Abraham
On 16/08/2012 5:46 AM, ramesh cheerla wrote: Dear Gromacs users, I am using gromacs for simulations of a polymer, for that I am planing to see how lattice parameters a , b & c are varying during simulation. Here lattice parameter "a" is the length of unit cell along X- direction, "

[gmx-users] box vectors - regd

2012-08-15 Thread ramesh cheerla
Dear Gromacs users, I am using gromacs for simulations of a polymer, for that I am planing to see how lattice parameters a , b & c are varying during simulation. Here lattice parameter "a" is the length of unit cell along X- direction, "b" is the length of the unit cell along "Y" axis