RE: [gmx-users] atom index number

2007-09-24 Thread Naser, Md Abu
Message- From: [EMAIL PROTECTED] on behalf of Erik Marklund Sent: Sat 22/09/2007 11:14 AM To: Discussion list for GROMACS users Subject: Re: [gmx-users] atom index number Hi, With less than 10 atoms, making an index file from a gro file is easy with grep, cut and awk. Make a gro file

Re: [gmx-users] atom index number

2007-09-22 Thread Erik Marklund
Hi, With less than 10 atoms, making an index file from a gro file is easy with grep, cut and awk. Make a gro file with trjconv, then process it with aforementioned tools. /Erik 21 sep 2007 kl. 17.33 skrev Naser, Md Abu: Hi Gmx user, I have wondering whether it is possible to extract

[gmx-users] atom index number

2007-09-21 Thread Naser, Md Abu
Hi Gmx user, I have wondering whether it is possible to extract index numbers for atoms from a particular region in the box such as, if a box divided into 10 slices along z and one wants to get all the atom's index number of protein in 1st slice or 3rd, etc. With regards, Abu Naser School