Hi,
With less than 100000 atoms, making an index file from a gro file is
easy with grep, cut and awk. Make a gro file with trjconv, then
process it with aforementioned tools.
/Erik
21 sep 2007 kl. 17.33 skrev Naser, Md Abu:
Hi Gmx user,
I have wondering whether it is possible to extract index numbers
for atoms from a particular
region in the box such as, if a box divided into 10 slices along z
and one wants to get all the atom's
index number of protein in 1st slice or 3rd, etc.
With regards,
Abu Naser
School Of Life Sciences
Heriot-Watt University
Edinburgh EH14 4AS
Email: [EMAIL PROTECTED]
Phone: +44(0)1314518265
Fax : +44(0) 131 451 3009
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_______________________________________________
Erik Marklund, PhD student
Laboratory of Molecular Biophysics,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: +46 18 471 4537 fax: +46 18 511 755
[EMAIL PROTECTED] http://xray.bmc.uu.se/molbiophys
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