Re: [gmx-users] analyzing beta factor

2009-02-04 Thread Martyn Winn
estions are greatly appreciated. Thank you. > >> Take the g_rmsf -res output, square it and multiply it by (IIRC) 800 > >> pi^2/3 (you can do all this in xmgrace). Check the factor. > >>> Muhammad Alif Mohammad Latif > >>> Department of Chemistry > >>>

Re: [gmx-users] analyzing beta factor

2009-02-04 Thread David van der Spoel
ience Universiti Putra Malaysia 43400 UPM Serdang, Selangor MALAYSIA --- On *Wed, 2/4/09, David van der Spoel //* wrote: From: David van der Spoel Subject: Re: [gmx-users] analyzing beta factor To: "Discussion list for GROMACS users" Date: Wednesday, February 4, 2009, 2:16 A

Re: [gmx-users] analyzing beta factor

2009-02-04 Thread Martyn Winn
> > > Muhammad Alif Mohammad Latif > > Department of Chemistry > > Faculty of Science > > Universiti Putra Malaysia > > 43400 UPM Serdang, Selangor > > MALAYSIA > > > > > > > > --- On *Wed, 2/4/09, David van der Spoel //* wrot

Re: [gmx-users] analyzing beta factor

2009-02-04 Thread David van der Spoel
: From: David van der Spoel Subject: Re: [gmx-users] analyzing beta factor To: "Discussion list for GROMACS users" Date: Wednesday, February 4, 2009, 2:16 AM özge kül wrote: > Hi users, > > I want to plot beta factor versus residue number pl

Re: [gmx-users] analyzing beta factor

2009-02-04 Thread özge kül
of Chemistry Faculty of Science Universiti Putra Malaysia 43400 UPM Serdang, Selangor MALAYSIA --- On Wed, 2/4/09, David van der Spoel wrote: From: David van der Spoel Subject: Re: [gmx-users] analyzing beta factor To: "Discussion list for GROMACS users" Date: Wednesday, February 4,

Re: [gmx-users] analyzing beta factor

2009-02-03 Thread David van der Spoel
özge kül wrote: Hi users, I want to plot beta factor versus residue number plot at the analyzing part.I read manual and search in the web but I could not find a reasonable result for this plot.I wonder if anybody know about it. What is the beta factor? Thank you, Özge

[gmx-users] analyzing beta factor

2009-02-03 Thread özge kül
Hi users, I want to plot beta factor versus residue number plot at the analyzing part.I read manual and search in the web but I could not find a reasonable result for this plot.I wonder if anybody know about it. Thank you, Özge ___ gmx-user