From: [EMAIL PROTECTED] [EMAIL PROTECTED] On Behalf Of Alif M Latif Sent: 02 May 2008 09:42 To: gmx-users@gromacs.org Subject: [gmx-users] Plotting B-factor
Dear GROMACS users and developers, I want to plot B-factor of a protein structure against residue. How can I do that?. Using option -oq in g_rmsf only produce bfac.pdb which is in .pdb file and assigned at each atom. Is there another way I can get the plot B-factor vs residue?. Any link to example or tutorial will be very helpful. Comments and Suggestions are greatly appreciated. Thank you. Muhammad Alif Mohammad Latif Department of Chemistry Faculty of Science Universiti Putra Malaysia 43400 UPM Serdang, Selangor MALAYSIA --- On Wed, 2/4/09, David van der Spoel <sp...@xray.bmc.uu.se> wrote: From: David van der Spoel <sp...@xray.bmc.uu.se> Subject: Re: [gmx-users] analyzing beta factor To: "Discussion list for GROMACS users" <gmx-users@gromacs.org> Date: Wednesday, February 4, 2009, 2:16 AM özge kül wrote: > Hi users, > > I want to plot beta factor versus residue number plot at the analyzing part.I read manual and search in the web but I could not find a reasonable result for this plot.I wonder if anybody know about it. > What is the beta factor? > Thank you, > Özge > > > > ------------------------------------------------------------------------ > > _______________________________________________ > gmx-users mailing list gmx-users@gromacs.org > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php -- David van der Spoel, Ph.D., Professor of Biology Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University. Box 596, 75124 Uppsala, Sweden. Phone: +46184714205. Fax: +4618511755. sp...@xray.bmc.uu.se sp...@gromacs.org http://folding.bmc.uu.se _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
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