Re: [gmx-users] adding Na and cl ions to pdb structure

2010-12-28 Thread TJ Mustard
Use genion. and read the manual for all of its wonderful uses. On December 22, 2010 at 12:53 AM mohsen ramezanpour wrote: Dear All How can I add one Na ion and cl ionĀ  to a pdb structure? for example I want to have a

Re: [gmx-users] adding Na and cl ions to pdb structure

2010-12-22 Thread Justin A. Lemkul
mohsen ramezanpour wrote: Dear All How can I add one Na ion and cl ion to a pdb structure? for example I want to have a pdb file which contains my protein and one Na and one Cl ion. by pymol?How? by manipulating pdb file?How? If you want to place them in a known location, just write their

[gmx-users] adding Na and cl ions to pdb structure

2010-12-22 Thread mohsen ramezanpour
Dear All How can I add one Na ion and cl ion to a pdb structure? for example I want to have a pdb file which contains my protein and one Na and one Cl ion. by pymol?How? by manipulating pdb file?How? Thanks in advance -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/ma