mohsen ramezanpour wrote:
Dear All
How can I add one Na ion and cl ion to a pdb structure?
for example I want to have a pdb file which contains my protein and one
Na and one Cl ion.
by pymol?How?
by manipulating pdb file?How?
If you want to place them in a known location, just write their coordinates in
by hand. If you want them inserted randomly in the box (in vacuo?), then use
genbox -ci -nmol for both Na+ and Cl-.
-Justin
Thanks in advance
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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