Re: [gmx-users] Re: Trajectory visualization

2011-04-15 Thread Erik Marklund
Your results are not affected by isualization, are they? Just keep a copy of the original trajectory for analysis. Erik bharat gupta skrev 2011-04-15 07.08: Reduicng no. of frames means breaking the simulation into smaller frames ... will it affect the result ?? On Thu, Apr 14, 2011 at 10:06

Re: [gmx-users] Re: Trajectory visualization

2011-04-15 Thread Dommert Florian
On Fri, 2011-04-15 at 15:15 +1000, Mark Abraham wrote: > On 15/04/2011 3:08 PM, bharat gupta wrote: > > Reduicng no. of frames means breaking the simulation into smaller > > frames ... will it affect the result ?? > > You can use trjconv -dt to reduce the number of frames per unit time, > not jus

Re: [gmx-users] Re: Trajectory visualization

2011-04-14 Thread Mark Abraham
On 15/04/2011 3:08 PM, bharat gupta wrote: Reduicng no. of frames means breaking the simulation into smaller frames ... will it affect the result ?? You can use trjconv -dt to reduce the number of frames per unit time, not just chopping into segments. Whether it affects your result is somethi

Re: [gmx-users] Re: Trajectory visualization

2011-04-14 Thread bharat gupta
Reduicng no. of frames means breaking the simulation into smaller frames ... will it affect the result ?? On Thu, Apr 14, 2011 at 10:06 PM, Mark Abraham wrote: > On 15/04/2011 2:49 PM, bharat gupta wrote: > >> Hi, >> >> I have done a simulation of 10ns but while viewing the trajectory in VMD I >>

Re: [gmx-users] Re: Trajectory visualization

2011-04-14 Thread Mark Abraham
On 15/04/2011 2:49 PM, bharat gupta wrote: Hi, I have done a simulation of 10ns but while viewing the trajectory in VMD I am getting some problems. After loading the .gro and .xtc file VMD stops working .. I used trjconv to compress the file but VMD doesnot read frames from tat file... How ca

[gmx-users] Re: Trajectory visualization

2011-04-14 Thread bharat gupta
Hi, I have done a simulation of 10ns but while viewing the trajectory in VMD I am getting some problems. After loading the .gro and .xtc file VMD stops working .. I used trjconv to compress the file but VMD doesnot read frames from tat file... How can I visualize the trajectories?? -- Bharat Ph.