On 15/04/2011 3:08 PM, bharat gupta wrote:
Reduicng no. of frames means breaking the simulation into smaller frames ... will it affect the result ??
You can use trjconv -dt to reduce the number of frames per unit time, not just chopping into segments. Whether it affects your result is something only you can answer, because only you know what you are trying to do.
Mark
On Thu, Apr 14, 2011 at 10:06 PM, Mark Abraham <mark.abra...@anu.edu.au <mailto:mark.abra...@anu.edu.au>> wrote:On 15/04/2011 2:49 PM, bharat gupta wrote: Hi, I have done a simulation of 10ns but while viewing the trajectory in VMD I am getting some problems. After loading the .gro and .xtc file VMD stops working .. I used trjconv to compress the file but VMD doesnot read frames from tat file... How can I visualize the trajectories?? How do you mean "does not read frames from that file"? Can you read an .xtc of one frame? Maybe VMD is running out of memory. Use trjconv to reduce the number of frames and try again. Mark-- gmx-users mailing list gmx-users@gromacs.org<mailto:gmx-users@gromacs.org> http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org <mailto:gmx-users-requ...@gromacs.org>. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- Bharat Ph.D. Candidate Room No. : 7202A, 2nd Floor Biomolecular Engineering Laboratory Division of Chemical Engineering and Polymer Science Pusan National University Busan -609735 South Korea Lab phone no. - +82-51-510-3680, +82-51-583-8343 Mobile no. - 010-5818-3680 E-mail : monu46...@yahoo.com <mailto:monu46...@yahoo.com>
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