subject:"\[gmx\-users\] RNA MD Simulation using GROMACS"

Re: [gmx-users] RNA MD Simulation using GROMACS

2013-05-20 Thread Erik Marklund

Hi, To get useful help with this issue you need to provide a more informative description of what when wrong, i.e. what gromacs tool was invoked and what input was used. Erik On 20 May 2013, at 10:59, Pruthvi Bejugam wrote: > Hi all, > >I want to perform a RNA (Just RNA no p

[gmx-users] RNA MD Simulation using GROMACS

2013-05-20 Thread Pruthvi Bejugam

Hi all, I want to perform a RNA (Just RNA no protein or DNA included) MD Simulation. Can anybody suggest me what are the general parameters should be used for the RNA MD Simulations. I know that AMBER and CHARMM force field work well for DNA and RNA. i have tried the RNA MD simulat