Re: [gmx-users] RE: value of d in editconf

2008-07-31 Thread Justin A. Lemkul
[EMAIL PROTECTED] wrote: Hi I am doing a 5 peptide(7 residue) simulation in a 5 nm cubic box. but during editconf i haven't given the option -d to specify the distance between the solute and the box. Now some of the atoms of my peptides are out of the box also is it normal? Does not applying -

[gmx-users] RE: value of d in editconf

2008-07-31 Thread alkasrivastava
Hi I am doing a 5 peptide(7 residue) simulation in a 5 nm cubic box. but during editconf i haven't given the option -d to specify the distance between the solute and the box. Now some of the atoms of my peptides are out of the box also is it normal? Does not applying -d is going to effect in any w