Hi I am doing a 5 peptide(7 residue) simulation in a 5 nm cubic box. but during editconf i haven't given the option -d to specify the distance between the solute and the box. Now some of the atoms of my peptides are out of the box also is it normal? Does not applying -d is going to effect in any way.
Thanks Alka _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
