Re: [gmx-users] Please rectify free energy problem

2011-08-30 Thread Mark Abraham
On 30/08/2011 11:52 PM, pawan raghav wrote: g_lie calculates the deltaG= alpha(p - w) + beta(p - w) equation. But when calculating DGbind from g_lie it will ask for only one term at a time i.e. -Elj for either p or w and -Eqq for either p or w. My question is when using only p for -Elj and

[gmx-users] Please rectify free energy problem

2011-08-30 Thread pawan raghav
g_lie calculates the deltaG= alpha(p - w) + beta(p - w) equation. But when calculating DGbind from g_lie it will ask for only one term at a time i.e. -Elj for either p or w and -Eqq for either p or w. My question is when using only p for -Elj and Vl-s el>p for -Eqq, how the LJ and EL terms calcul