g_lie calculates the deltaG= alpha(<Vl-s LJ>p - <Vl-s LJ>w) + beta(<Vl-s el>p - <Vl-s el>w) equation. But when calculating DGbind from g_lie it will ask for only one term at a time i.e. -Elj for either <Vl-s LJ>p or <Vl-s LJ>w and -Eqq for either <Vl-s el>p or <Vl-s el>w. My question is when using only <Vl-s LJ>p for -Elj and Vl-s el>p for -Eqq, how the LJ and EL terms calculated for ligand-water interaction or in vice-versa condition for ligand-protein interactions to complete the deltaG equation?
-- Pawan
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