ed it for 20ns or so.
- Original Message
From: "[EMAIL PROTECTED]" <[EMAIL PROTECTED]>
To: gmx-users@gromacs.org
Sent: Monday, September 22, 2008 6:55:37 AM
Subject: [gmx-users] Leaflet of Bilayer
In my opinion, use any technique that you want (genbox included) then
run
In my opinion, use any technique that you want (genbox included) then
run the resulting system for >=50ns while plotting the area per lipid
and order parameters over time. When these values stop drifting over
time then you have an equilibrated bilayer. If you have access to a
cluster that s
Justin A. Lemkul wrote:
minnale wrote:
Hi Jochen thanks for your reply
I have gone through this recent mail
http://www.gromacs.org/pipermail/gmx-users/2008-September/036508.html
more over if I use genconf command like this
genconf -f .gro -o out -nbox 2 1 1 -dist 0 0 0 its adding 128 in
minnale wrote:
Hi Jochen thanks for your reply
I have gone through this recent mail
http://www.gromacs.org/pipermail/gmx-users/2008-September/036508.html
more over if I use genconf command like this
genconf -f .gro -o out -nbox 2 1 1 -dist 0 0 0 its adding 128 in
eachleaflet I dont wany t
Hi Jochen thanks for your reply
I have gone through this recent mail
http://www.gromacs.org/pipermail/gmx-users/2008-September/036508.html more over
if I use genconf command like this
genconf -f .gro -o out -nbox 2 1 1 -dist 0 0 0 its adding 128 in eachleaflet I
dont wany that many popc mole
minnale wrote:
>
> Hi all,
>I have extended popc bilayer(intial popc.pdb from Dr.Tielmen site) by
> using genbox command, I issued
> genbox -cs popc128a.gro -o out.gro -box 9.2 9.2 6.9 it ran successfully with
> increase of popc and water molecules.
> Now I want to visualise this out fi
Hi all,
I have extended popc bilayer(intial popc.pdb from Dr.Tielmen site) by using
genbox command, I issued
genbox -cs popc128a.gro -o out.gro -box 9.2 9.2 6.9 it ran successfully with
increase of popc and water molecules.
Now I want to visualise this out file in VMD in a way that in ea
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