Re: [gmx-users] Invalid line in coordinate file (grompp tool)

2013-10-02 Thread Justin Lemkul
On 10/2/13 8:45 AM, Andrew Bostick wrote: Dear Justin Thanks for your quick reply. What is reason of this issue? My gro file contains 11383 lines. 11383-3=11380 This value is equal to second line. Sorry, misread your initial post. One of two things is happening: 1. You've used an edit

[gmx-users] Invalid line in coordinate file (grompp tool)

2013-10-02 Thread Andrew Bostick
Dear Justin Thanks for your quick reply. What is reason of this issue? My gro file contains 11383 lines. 11383-3=11380 This value is equal to second line. -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at htt

Re: [gmx-users] Invalid line in coordinate file (grompp tool)

2013-10-02 Thread Justin Lemkul
On 10/2/13 8:21 AM, Andrew Bostick wrote: Dear users, I have used grompp command for minimising my system (protein and membrane). I am getting the error: --- Program grompp, VERSION 4.5.1 Source code file: confio.c, line: 744 Fatal error: I

[gmx-users] Invalid line in coordinate file (grompp tool)

2013-10-02 Thread Andrew Bostick
Dear users, I have used grompp command for minimising my system (protein and membrane). I am getting the error: --- Program grompp, VERSION 4.5.1 Source code file: confio.c, line: 744 Fatal error: Invalid line in system.gro for atom 11380: 6