Sir,
Yes exactly I did the same. I will try with this option now.
Thanks.
With Regards
M. Kavyashree
On Sat, Jun 25, 2011 at 2:01 AM, Sarath Chandra Dantu wrote:
> I suppose you are writing a extr.pdb form g_anaeig. Try writing down extr.
> xtc and load it onto a pdb/gro using vmd. Then it shou
Hello Sir,
It is not a multimer sir, I was a single chain protein
which was intact while submitting to MD. It has no problem
when I project the 100ns trajectory on the vector but only
in case of half of this time -50ns, it has problem.
Thank you
With Regards
M.Kavyashree
On Sat, Jun 25, 2011 at
I suppose you are writing a extr.pdb form g_anaeig. Try writing down extr.
xtc and load it onto a pdb/gro using vmd. Then it should not be a problem.
Best Wishes,
Sarath
> Did you make the molecules whole and removed jumps (in case of a multimer)
> prior to filtering?
>
> Cheers,
>
> Tsjerk
>
>
Did you make the molecules whole and removed jumps (in case of a multimer)
prior to filtering?
Cheers,
Tsjerk
On Jun 24, 2011 8:10 PM, "Kavyashree M" wrote:
Dear user,
When projection of a trajectory (50ns) on an eigen vector
was visualised in pymol, there was broken chains, but when
I projec
Dear user,
When projection of a trajectory (50ns) on an eigen vector
was visualised in pymol, there was broken chains, but when
I projected the simulation (continued for 50 more ns ie.,
total 100ns) this broken chain was not seen why?
Thanking you
With Regards
M. Kavyashree
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