Did you make the molecules whole and removed jumps (in case of a multimer) prior to filtering?
Cheers, Tsjerk On Jun 24, 2011 8:10 PM, "Kavyashree M" <hmkv...@gmail.com> wrote: Dear user, When projection of a trajectory (50ns) on an eigen vector was visualised in pymol, there was broken chains, but when I projected the simulation (continued for 50 more ns ie., total 100ns) this broken chain was not seen why? Thanking you With Regards M. Kavyashree -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
-- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
