Re: [gmx-users] D-aminoacids in input file

Hi Shima, You can use the same parameters. There is no difference other than the position of atoms. Cheers, Tsjerk On Mon, Jul 1, 2013 at 9:52 AM, Shima Arasteh wrote: > Dear gmx users, > > I have D amino acids in my input .pdb file. The force field which I aim to > use, is CHARMM. I am wond

[gmx-users] D-aminoacids in input file

Dear gmx users, I have D amino acids in my input .pdb file. The force field which I aim to use, is CHARMM. I am wondering if I need to modify aminoacids.rtp file? Or it would be OK if I use the same parameters as L aminoacids for D aminoacids? Thanks for your suggestions. They would be apprec