Hi Shima, You can use the same parameters. There is no difference other than the position of atoms.
Cheers, Tsjerk On Mon, Jul 1, 2013 at 9:52 AM, Shima Arasteh <shima_arasteh2...@yahoo.com>wrote: > Dear gmx users, > > I have D amino acids in my input .pdb file. The force field which I aim to > use, is CHARMM. I am wondering if I need to modify aminoacids.rtp file? Or > it would be OK if I use the same parameters as L aminoacids for D > aminoacids? > > > > Thanks for your suggestions. They would be appreciated. > > Sincerely, > Shima > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- Tsjerk A. Wassenaar, Ph.D. -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
