Re: [gmx-users] Connecting sidechains in gromacs file

are you sure that your topology file is correctly written? On 07/15/2011 11:34 AM, Zack Scholl wrote: Hi all - I'm running a simulation that has an implicit solvent. I ran my simulation and it seems that everything not connected to the backbone has floated off into space. Is there a way to de

[gmx-users] Connecting sidechains in gromacs file

Hi all - I'm running a simulation that has an implicit solvent. I ran my simulation and it seems that everything not connected to the backbone has floated off into space. Is there a way to define connections so that side chains stay connected? Has anyone had this problem before? Thanks, Since