are you sure that your topology file is correctly written?
On 07/15/2011 11:34 AM, Zack Scholl wrote:
Hi all -
I'm running a simulation that has an implicit solvent. I ran my
simulation and it seems that everything not connected to the backbone
has floated off into space. Is there a way to define connections so
that side chains stay connected? Has anyone had this problem before?
Thanks,
Sincerely,
Zack Scholl
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