Re: [gmx-users] Buffer overflow on Fedora 10

2009-07-06 Thread David van der Spoel
Adam Huffman wrote: Jussi Lehtola wrote: On Mon, 2009-07-06 at 11:37 +0100, Adam Huffman wrote: I've installed several debuginfo packages and when run via gdb the crash doesn't occur...: (gdb) r Starting program: /usr/bin/g_mdrun warning: "/usr/lib/debug/usr/lib64/atlas/libblas.so.3.0.debug

Re: [gmx-users] Buffer overflow on Fedora 10

2009-07-06 Thread Adam Huffman
Jussi Lehtola wrote: On Mon, 2009-07-06 at 11:37 +0100, Adam Huffman wrote: I've installed several debuginfo packages and when run via gdb the crash doesn't occur...: (gdb) r Starting program: /usr/bin/g_mdrun warning: "/usr/lib/debug/usr/lib64/atlas/libblas.so.3.0.debug": The separate deb

Re: [gmx-users] Buffer overflow on Fedora 10

2009-07-06 Thread Jussi Lehtola
On Mon, 2009-07-06 at 11:37 +0100, Adam Huffman wrote: > I've installed several debuginfo packages and when run via gdb the crash > doesn't occur...: > > (gdb) r > Starting program: /usr/bin/g_mdrun > warning: "/usr/lib/debug/usr/lib64/atlas/libblas.so.3.0.debug": The > separate debug info file

Re: [gmx-users] Buffer overflow on Fedora 10

2009-07-06 Thread Adam Huffman
Jussi Lehtola wrote: On Mon, 2009-07-06 at 11:18 +0100, Adam Huffman wrote: I have an odd problem running the Gromacs 4.0.4 RPM installable as part of Fedora 10. On two machines, it runs fine. On a third, each program I invoke dies as a result of the buffer overflow detector in glibc. He

Re: [gmx-users] Buffer overflow on Fedora 10

2009-07-06 Thread Jussi Lehtola
On Mon, 2009-07-06 at 11:18 +0100, Adam Huffman wrote: > I have an odd problem running the Gromacs 4.0.4 RPM installable as part > of Fedora 10. On two machines, it runs fine. On a third, each program > I invoke dies as a result of the buffer overflow detector in glibc. > Here's some example

[gmx-users] Buffer overflow on Fedora 10

2009-07-06 Thread Adam Huffman
I have an odd problem running the Gromacs 4.0.4 RPM installable as part of Fedora 10. On two machines, it runs fine. On a third, each program I invoke dies as a result of the buffer overflow detector in glibc. Here's some example output: g_mdrun :-) G R O M A C