Jussi Lehtola wrote:
On Mon, 2009-07-06 at 11:18 +0100, Adam Huffman wrote:
I have an odd problem running the Gromacs 4.0.4 RPM installable as part
of Fedora 10. On two machines, it runs fine. On a third, each program
I invoke dies as a result of the buffer overflow detector in glibc.
Here's some example output:
The same thing happens if I recompile the SRPM myself and install that.
Any clues as to how to track this down would be greatly appreciated.
Install the debuginfo with
# debuginfo-install gromacs
and run gromacs with gdb:
$ gdb g_mdrun
(gdb) run -s topol.tpr (and so on.)
Gdb might tell you to install the debuginfo of other packages too.
I have been working on getting also debug binaries in the package, but I
won't push the new package until 4.0.6 is released which fixes the build
error on ppc64 architecture.
I've installed several debuginfo packages and when run via gdb the crash
doesn't occur...:
(gdb) r
Starting program: /usr/bin/g_mdrun
warning: "/usr/lib/debug/usr/lib64/atlas/libblas.so.3.0.debug": The
separate debug info file has no debug info
warning: "/usr/lib/debug/usr/lib64/atlas/liblapack.so.3.0.debug": The
separate debug info file has no debug info
[Thread debugging using libthread_db enabled]
then the usage message and
Program exited with code 0377.
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