subject:"\[gmx\-users\] Analysis of Protein Complex"

Re: [gmx-users] Analysis of Protein Complex

2011-11-30 Thread Tsjerk Wassenaar

Hi Saba, You can use g_mdmat or run g_rmsdist for different time windows. It's also a good idea to have a look at all the analysis tools and think of how they may suit your purpose. Cheers, Tsjerk On Thu, Dec 1, 2011 at 5:43 AM, Saba Ferdous wrote: > Dear Sir, > I am studying a protein complex

[gmx-users] Analysis of Protein Complex

2011-11-30 Thread Saba Ferdous

Dear Sir, I am studying a protein complex. I have perforemed 10ns simulations. I saved snapshots every10ps. sp all snap shopts I got were 1000. Now I want to analyse them with respect to interactions. I want to check the binding surfaces and binding points which come closer and incontact during s