Dear Sir, I am studying a protein complex. I have perforemed 10ns simulations. I saved snapshots every10ps. sp all snap shopts I got were 1000.
Now I want to analyse them with respect to interactions. I want to check the binding surfaces and binding points which come closer and incontact during simulations. Can you devise me a way to perform such kind of analysis. Further more I am interested to know the binding energies as well. What sort of other analysis can be done on this complex. -- Saba Ferdous Research Scholar (M. Phil) National Center for Bioinformatics Quaid-e-Azam University, Islamabad Pakistan
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