that
Pedro's created the image most of the work is done, I had been manually
configuring a clean ubuntu image previously.
Thomas Ballinger
Psychiatry Neuroimaging Lab
Brigham and Women's Hospital
2011/11/11 Pedro Paulo de Magalhães Oliveira Junior
> I've put together the ba
code (including
suggestions to do the running Freesurfer part completely differently) but
otherwise you're welcome to just copy the scripts and modify them
yourselves if they're useful to you.
https://github.com/thomasballinger/remoteFreesurfer
Thomas Ballinger
2011/11/11 Nick Schmans
Satra, the ipython example looks great. The scripts I posted also use
fabric for running Freesurfer, but don't download Freesurfer due to it
already being installed on Pedro's image. I agree with Satra that
individually administered instances might work better for those wishing to
run a few cases w
s critical for us for grant renewal
>> purposes). Ideas on a clean way to do this?
>>
>> N.
>>
>>
>> On Nov 12, 2011, at 11:10 AM, Thomas Ballinger
>> wrote:
>>
>> Satra, the ipython example looks great. The scripts I posted also use
>>
I had this problem last Friday with v4.5 centos 64 tar.gz file as well.
On Mon, Apr 11, 2011 at 7:04 AM, Nikhil Pratap Singh wrote:
> Hi,
>
> I was trying to download freesurfer realease 4.3 from the archives but
> unable to do so. Is the website
> down?freesurfer-Linux-centos4_x86_64-stable-
nd
"other" CSF values.(calculate from aseg.stats or wmparc.stats by summing
*-Lateral-Ventricle, *-Inf-Lat-Vent, 3rd-Ventricle, 4th-Ventricle, CSF, and
5th-Ventricle)
Thanks very much to anyone with time to respond,
Thomas Ballinger
Research Assistant at PNL at BWH
_
--in mri/norm.mgz --in-intensity-name norm --in-intensity-units
> MR --etiv --surf-wm-vol --surf-ctx-vol --ctab
> $FREESURFER_HOME/ASegStatsLUT.txt --subject yoursubject
>
> This will create "new.aseg.stats". In the header of this file you will find
> Total Gray and Total White
I'd also be very interested to hear about good reinotopic stimuli; we've
used 6Hz and 14 ring sizes for eccentricity mapping in the past.
Thomas Ballinger
On Thu, Jul 7, 2011 at 3:56 AM, Anders Hougaard wrote:
> Dear freesurfers,
>
>
> Which stimuli do you think provid
