[Freesurfer] LocalGI error

2014-07-28 Thread Sarina Iwabuchi
ror in make_outer_surface (line 24) vol=MRIread(filled_volume); Has anyone come across this? I do have gunzip on my system. Thanks very much, Sarina Iwabuchi Division of Psychiatry and Applied Psychology Room B07 Institute of Mental Health Triumph Road University of Nottingham Nottingham N

Re: [Freesurfer] LocalGI error {Disarmed}

2014-07-29 Thread Sarina Iwabuchi
Hi Marie,I've attached the log file.Thanks very much,Sarina Iwabuchi This message and any attachment are intended solely for the addressee and may contain confidential information. If you have received this message in error, please send it back to me, and immediately delete it.   Plea

Re: [Freesurfer] LocalGI error

2014-07-29 Thread Sarina Iwabuchi
On 29 Jul 2014, at 11:29, Sarina Iwabuchi wrote: > > Hi Marie, > > I've attached the log file. > > Thanks very much, > > Sarina Iwabuchi > > > This message and any attachment are intended solely for the addressee and may > contain confidenti

Re: [Freesurfer] LocalGI error {Disarmed}

2014-07-30 Thread Sarina Iwabuchi
Hi Doug, I get the following error: Undefined function 'MRIread' for input arguments of type 'char'. Sarina On 29 Jul 2014, at 18:34, Douglas N Greve wrote: > a = > MRIread('/Volumes/HD-PNTU3/MISSEDDATA/extn003/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.m

Re: [Freesurfer] LocalGI error {Disarmed}

2014-07-30 Thread Sarina Iwabuchi
7;%s/matlab', getenv('FREESURFER_HOME'))) > > cheers > Bruce > > On Wed, > 30 Jul 2014, Sarina Iwabuchi wrote: > >> Hi Doug, >> I get the following error: >> >> Undefined function 'MRIread' for input arguments of type 'char'

Re: [Freesurfer] LocalGI error {Disarmed}

2014-07-30 Thread Sarina Iwabuchi
I get: /usr/bin/gunzip On 30 Jul 2014, at 15:58, Douglas N Greve wrote: > > Is gunzip in your path? When you open a shell and type > which gunzip > > what is printed out? > > > On 07/30/2014 10:45 AM, Sarina Iwabuchi wrote: >> Hi Bruce, >> >>

Re: [Freesurfer] LocalGI error {Disarmed}

2014-07-30 Thread Sarina Iwabuchi
set: Variable name must begin with a letter. gunzip: Command not found. ans = 1 On 30 Jul 2014, at 16:27, Douglas N Greve wrote: > > And in matlab, what do you get if you type > > unix('which gunzip') > > > > > On 07/30/2014 11:08 AM, Sarina Iwab