Re: [Freesurfer] cortical thickness& curvature index

; reading input white surface >> /usr/local/freesurfer/subjects/subject1/surf/rh.white... >> structure is "rh.cortex.label" >> number of vertices = 158401 >> total surface area = 102285 mm^2 >> total gray matter volume = 291519 mm^3 >> average cortical t

Re: [Freesurfer] Distance between two points along cortical

hese two point along cortical > surface (not direct distance). Does FS report this kind of distance? Any > suggestion will be very appreciated. > > Aize > > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu &

Re: [Freesurfer] distance between two points along cortical surface

--mpmOverlay euclidean --mpmProg pathFind --mpmArgs startVertex:1,endVertex:3 Note, that this is *not* the geodesic, but is very close. The path is constrained to run along the surface mesh, so will in general be slightly longer than the geodesic. -- Rudolph Pienaar, M.Eng, D.Eng /

Re: [Freesurfer] fscalc size mismatch error

on input filetype sizes, > I found a size mismatch, i.e. len(input1)!=len(input2) > > Any suggestions? > > Thanks, > Corinna > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nm

Re: [Freesurfer] (no subject)

list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >

Re: [Freesurfer] Making a patch of area A

tance) into account. --R -- Rudolph Pienaar, M.Eng, D.Eng / email: [EMAIL PROTECTED] MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging 149 (2301) 13th Street, Charlestown, MA 02129 USA ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvar

[Freesurfer] "Intermediary" scripts ready....

let me know and I'll help you set up the prerequisites. I'm occupied with something for the rest of this afternoon, so we can get together tomorrow if you feel like it. Cheers --R -- Rudolph Pienaar, M.Eng, D.Eng / email: [EMAIL PROTECTED] MGH/MIT/HMS Athinoula A. Martinos Center for

[Freesurfer] mris_convert help

7;ve tried called it using > mris_convert rh.inflated rh.inflated.txt but the resultant file is also a binary (i.e. *not* text). I have also tried > mris_convert -c rh.curv rh.inflated rh.inflated.txt this produces a much smaller resultant file, which is still binary. Any help? Cheer

Re: [Freesurfer] mris_convert help

On Friday 11 March 2005 13:24, Bruce Fischl wrote: > the output surface has to have the extension .asc . Thanks, that fixed it. Cheers --R -- Rudolph Pienaar, M.Eng, D.Eng / email: [EMAIL PROTECTED] MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging 149 (2301) 13th Str

Re: [Freesurfer] using external usb hard drive with freesurfer

On Monday 06 June 2005 17:41, Andrew H Bell wrote: > > However, when I check, the file is there but is listed in lower-case > (i.e., "cor-001"). I cannot rename the file to upper-case - the file > already exists... > You might try renaming the files to upper case in this manner: (In a Windows co

[Freesurfer] Overlaying / displaying Gaussian curvature

Hi all - Apologies if this is a simple question, but how can I display the Gaussian curvature on a surface using 'tksurf'? Cheers --R -- Rudolph Pienaar, M.Eng, D.Eng / email: [EMAIL PROTECTED] MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging 149 (2301) 13th Street, C

Re: [Freesurfer] using Freesurfer with external storage media

ext2/ext3 driver to Windows and have full read/write access to such a partitions. See: http://www.fs-driver.org/index.html Cheers -=R -- Rudolph Pienaar, M.Eng, D.Eng / email: [EMAIL PROTECTED] MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging 149 (2301) 13th Street, Charle

Re: [Freesurfer] mgz conversion

ernel and version. If you have a RedHat (or related) distro (like Fedora, CentOS, Mandrake), you can also type more /etc/issue to provide details on the distribution itself. -- Rudolph Pienaar, M.Eng, D.Eng / email: [EMAIL PROTECTED] MGH/MIT/HMS Athinoula A. Martinos Center for Biomedica

Re: [Freesurfer] mgz conversion

u - (and enter the root password). Change to the directory where you downloaded the gsl rpm files. Say you downloaded them to /tmp: cd /tmp Now install them with rpm -Uhv *.rpm and you'll see a short report as each rpm is installed. You should be all set now. Good luck,

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