Hi Surfers,
Is there anyway to pass the full address of a surface to mri_vol2surf? To
clarify, we are using surfaces that are saved outside /surf/ and we prefer
not to relocate them every time that we want to use mri_vol2surf.
Thanks
___
Freesurfer
Hi Surfers,
I was wondering if there is a way to load a tcl file with rtview command.
Specifically, I need to change the color table to RYGB, remove the aparc, ... .
Thanks
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr
s N. Greve
Sent: Friday, July 17, 2020 12:32 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] rtview - loading a tcl file
I just added --tcl to rtview. The new version is in dev
On 7/17/2020 12:23 PM, Nasr, Shahin,Ph.D. wrote:
Hi Surfers,
I was wondering if there is a way to load
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Douglas N. Greve
Sent: Friday, July 17, 2020 1:04 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] rtview - loading a tcl file
ok, try now
On 7/17/2020 12:49 PM, Nasr, Shahin,Ph.D. wrote:
Thanks. But as far as I
@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] rtview - loading a tcl file
What is the tksurfer command that is output?
On 7/17/2020 1:13 PM, Nasr, Shahin,Ph.D. wrote:
Unfortunately it is not working. My command is like this:
rtview --s SUBJ --real real.nii --imag imag.nii --eccen --hemi lh --fsig
: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Douglas N. Greve
Sent: Friday, July 17, 2020 1:38 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] rtview - loading a tcl file
sorry, they again
On 7/17/2020 1:27 PM, Nasr, Shahin,Ph.D. wrote:
tksurfer SUBJ lh inflated -aparc -tcl
: Friday, July 17, 2020 1:45 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] rtview - loading a tcl file
OK, try again:)
On 7/17/2020 1:42 PM, Nasr, Shahin,Ph.D. wrote:
the tksurfer look correct as below
tksurfer SUBJ lh inflated -aparc -tcl
/usr/local/freesurfer/dev/lib/tcl
Hi Surfers,
I get the following error when I use tksurfer for one of our subjects:
znzTAGskip: tag=1830834290, failed to calloc 1834378240 bytes!
To clarify, this error is only limited to freesurfer version 6.0 and 7. But
version 5.3 works fine with the same subject.
Regards
__
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Nasr, Shahin,Ph.D.
Sent: Wednesday, July 22, 2020 12:44 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] tksurfer - failed to calloc
Hi Surfers,
I get the following error when I use tksurfer for one of our subjects
Hi Surfers,
I have faced an issue with preproc-sess and I appreciate your help. I
have a single slice EPI scan (number of TRs > 500; TR=0.2). When I tried to do
preproc-sess, mc-afni2 is called and it crashed. When I checked the log, I
noticed this:
3dvolreg.afni -verbose -dfile 005/fmc
Hi Surfers,
For one subject, when I run mris_pmake as below:
mris_pmake --subject --hemi lh --surface smoothwm --mpmProg
pathFind --mpmArgs vertexStart:,vertexEnd:
--mpmOverlay euclidean
I get the following error:
mris_pmake error - freadFloat: fread failed
This error appears irrespecti
or freeview -f
On 11/12/2020 9:52 AM, Nasr, Shahin,Ph.D. wrote:
Hi Surfers,
For one subject, when I run mris_pmake as below:
mris_pmake --subject --hemi lh --surface smoothwm --mpmProg
pathFind --mpmArgs vertexStart:,vertexEnd:
--mpmOverlay euclidean
I get the following error:
mris_pmake
Dear Surfers,
I am using freesurfer 7.1.1 to view flattened patches and I have faced
two issues:
1) When I elevate the camera (see the command below), the loaded image is
not centered. Is there any command (key) to recenter the image other than
manually moving it?
2) The "measu
mpled out far enough/densely enough. The
defaults are super old (7 neighbor ring, 12 distances/ring). You could try
something like -distances 20 20 and see if that fixes things (and -norand if
you want)
Cheers
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Nasr, Shahin
Sent: Tuesday, April 11, 2023 6:40 PM
To: Freesurfer support list ; Nasr,
Shahin,Ph.D.
Subject: RE: mris_flatten Version 6 vs. 7
Thanks Louis!
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Vinke, Louis N.,PHD
Sent: Tuesday, April 11, 2023 6:08 PM
To: Freesurfer support
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