[Freesurfer] combining aseg and seg_edited files for an atlas

2014-07-09 Thread N/A N/A
Hi Freesurfer forum, I have never used the forum before but I am a long time user of Freesurfer and I am currently working on making a new atlas for the cerebellum. However I am having a problem loading my *seg_edited.mgz* files into the *rebuild_gca_atlas.csh* script. So I renamed my *aseg.mgz* f

Re: [Freesurfer] combining aseg and seg_edited files for an atlas

2014-07-10 Thread N/A N/A
segmentation, make it unique > > MRIwrite(aseg,'newaseg.mgz') > > > > On 07/09/2014 01:26 PM, N/A N/A wrote: > > Hi Freesurfer forum, > > > > I have never used the forum before but I am a long time user of > > Freesurfer and I am currentl

[Freesurfer] Running GCA atlas, problem with talairach

2014-10-08 Thread N/A N/A
Hi Freesurfers, I am trying to make an atlas using the GCA algorithm and the error message I just got is asking for the talairach.xfm file. The scans I am using were originally run through freesurfer 3.1 and talairach processing was not done. What do you suggest I do to use these scans in my new a

[Freesurfer] Trying to make GCA atlas, problem with talairach file

2014-10-15 Thread N/A N/A
Hi Freesurfers, I am trying to make an atlas using the GCA algorithm and the error message I just got is asking for the talairach.xfm file. The scans I am using were originally run through freesurfer 3.1 and talairach processing was not done. What do you suggest I do to use these scans in my atlas