Hi Freesurfer forum, I have never used the forum before but I am a long time user of Freesurfer and I am currently working on making a new atlas for the cerebellum. However I am having a problem loading my *seg_edited.mgz* files into the *rebuild_gca_atlas.csh* script. So I renamed my *aseg.mgz* file to *seg_edited* and that worked but my resulting image is not great.
I think it did not work with my original *seg_edited* file because the atlas needed cortex data to complete the process and my original *seg_edited* file did not have and my *aseg* does. I would like to try and combine my *aseg* file and my original *seg_edited* files together but I realized that no one has apparently asked about doing that before on your forums. Is there anyway to combine those files? I would appreciate any advise on the matter! Thank you, Alexarae Bryon FIU student
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