[Freesurfer] [freesurfer] FS5.1 talairach issue

2011-08-10 Thread Myriam Siefert
wrong but can't figure out what nor what to do about it. Any advice would be highly appreciated. Thanks in advance Myriam Siefert, MD, MS candidate Visiting scholar in SACNlab Northwestern University ___ Freesurfer mailing list Freesurfer@nmr.m

Re: [Freesurfer] [freesurfer] FS5.1 talairach issue

2011-08-15 Thread Myriam Siefert
Hi Nick, Sorry to bother you but I wondered if you had had the time to take a look at my dataset. Thank you very much, Myriam 2011/8/11 Myriam Siefert > Hi Nick, > I just would like to make sure that you had received my data, otherwise I > can send it again possibly by another mean

Re: [Freesurfer] [freesurfer] FS5.1 talairach issue

2011-08-15 Thread Myriam Siefert
> the transform created by the default (not using the -use-mritotal flag) > seems good enough for freesurfer purposes, and it looks correct in > tkmedit (when loading the talairach.xfm), so i would suggest using that > one. > > n. > > On Mon, 2011-08-15 at 11:54 -0500, Myriam Sie

Re: [Freesurfer] [freesurfer] FS5.1 talairach issue

2011-08-15 Thread Myriam Siefert
Sorry I meant those same subjects' transforms look much better with *FS 5.0* . 2011/8/15 Myriam Siefert > Hi Nick, > I have this problem with quite a few of my subjects, usually the fuzzy > transform volume in tkregister looks smaller than the subject's brain. To >

[Freesurfer] mri_convert Siemens Allegra Dicom problem

2011-03-14 Thread Myriam Siefert
bjects (for whom we used the dicoms)? Thank you very much in advance, Myriam Siefert ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended onl

[Freesurfer] New version and workflow

2011-07-11 Thread Myriam Siefert
the new release (if less or no editing is needed, checking the output only after recon-all -all would obviously save time...)? Is less need for editing expected with the new release? Or is less editing now advised ("Less is more")? Thanks in advance for any advice! Myri