Hello Freesurfer Experts,
I'm trying to troubleshoot a problem where the main surface in our brains is
not adjusting following white matter edits using Freesurfer 5.3. To be clear,
the procedure here is:
1) Make edits to wm.mgz
2) Run recon-all -3T -mprage -autorecon2-wm -autorecon3
Following
An experienced, independent, and organized individual is sought for a full-time
Research Study Coordinator position in the Stress and Development Laboratory at
the University of Washington Psychology Department, run by Katie McLaughlin,
PhD. The individual in this position would coordinate the
Hi Doug et al,
I'm trying to run an analysis in QDEC and continue to get an error that says
that the QDEC GLM design creates 0 factors.
I'm attaching my data table here as well as the output of QDEC. I've tried
deleting all variables in my data file other than one and testing just that
compar
emean 4609.048168177.248
Number of subjects: 42
Number of factors:11 (2 discrete, 9 continuous)
Number of classes:4
Number of regressors: 40
On 07/31/2014 02:27 PM, McLaughlin, Katie wrote:
> Hi Doug et al,
>
> I'm trying to run an analysis in QDEC and conti
.)
I haven't been able to find any information on this error in the archive -
would love your thoughts.
Thanks,
Kate
From: freesurfer-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of McLaughlin, Katie
[kat
e sat bands in the
> neck would do it. I think vessels are usually bright in the mprage, but
> don't usually case problems. Comments welcome....
>
> cheers
>
> Bruce
>
> On Fri, 1 Aug 2014, McLaughlin, Katie wrote:
>
>>
>> Hi Doug, Bruce, et al.
>> We
ind subject '1165' in SUBJECTS_DIR
Too many subjects not found!
Input table:
/neuro/labs/sheridanlab/projects/SAS/FreeSurfer/FS_5.3/qdec/qdec.table.maltreatment.dat
________
From: freesurfer-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harva
27;/net/rc-fs-nfs/ifs/data/Shares/DMC-Sheridan2/projects/SAS/FreeSurfer/FS_5.3'
From: freesurfer-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve
[gr...@nmr.mgh.harvard.edu]
Sent: Friday, August 01, 20
mean-0.000 1.410
hs_less 0.119 0.328
internal_demean 0.00012.769
external_demean 0.000 9.759
ICV_demean 4609.048 168177.248
Nu
Hi Doug et al,
After solving one issue with QDEC we have run into another. I previously
posted an error related to QDEC being unable to find subjects in the subjects
directory. That problem was solved by updating the /bin/sh location for ubuntu
(will post the solution that worked for us to th
...@nmr.mgh.harvard.edu] on behalf of McLaughlin, Katie
[katie.mclaugh...@childrens.harvard.edu]
Sent: Friday, August 01, 2014 5:45 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] GLM error in QDEC
Hi Doug,
Same error when data table created in Linux
There are a number of messages about this
res/DMC-Sheridan2/projects/SAS/FreeSurfer/FS_5.3'
which seems to imply that it might be set to the location of your
freesurfer installation, and not the location of the subject data (the
directory where '1009', '1014', etc. are found).
N.
On Tue, 2014-08-05 at 23:07 +, McLau
Hi Nick,
We solved this.
Thanks for your help,
Kate
From: freesurfer-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of McLaughlin, Katie
[katie.mclaugh...@childrens.harvard.edu]
Sent: Monday, August 11, 2014 3:42 PM
To
Research Assistant Position
Integrated Brain Imaging Center
University of Washington
An experienced, independent, and organized individual is sought for a full-time
Research Coordinator position working with Natalia Kleinhans, Ph.D., and Katie
McLaughlin, Ph.D., at the Integrated Brain Imaging C
Research Assistant Position
Integrated Brain Imaging Center
University of Washington
An experienced, independent, and organized individual is sought for a full-time
Research Coordinator position working with Natalia Kleinhans, Ph.D., and Katie
McLaughlin, Ph.D., at the Integrated Brain Imaging C
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