[Freesurfer] fsgd

Dear FreeSurfer experts, I am trying to start mris_preproc, but unfortunately it doesn't find my created fsgd file. I saved it in the foulder where you can find all subjects data. Shall I save it somewhere else? Thanks for your help, best Marie ___ Fre

Re: [Freesurfer] fsgd

help Marie 2012/6/6 Douglas Greve > Hi Marie, you have to pass it as a command-line option with --fsgd > doug > > > On 6/6/12 4:19 AM, Marie Schneider wrote: > > Dear FreeSurfer experts, > > I am trying to start mris_preproc, but unfortunately it doesn't find my

[Freesurfer] correction for multiple comparisons

Dear FreeSurfer experts, I have some questions about corrections for multiple comparisons in FreeSurfer. I have two samples, one consisting of two groups and one consisting of three groups. I do the comparison with the sample of two groups in qdec. Correcting for multiple comparisons, I get a sig

Re: [Freesurfer] correction for multiple comparisons

ge your conclusion. > > For monte carlo, we generally use 1 iterations. If you are using the > whole hemisphere, then you can used the cached tables. See the > "command-line" tutorial. > > doug > > On 06/08/2012 08:03 AM, Marie Schneider wrote: > > De

Re: [Freesurfer] correction for multiple comparisons

e a while > (hours or days) > > > On 06/12/2012 08:03 AM, Marie Schneider wrote: > >> Thank you very much for your answer. >> >> Are 10 000 iterations also used when I am running a Monte Carlo >> simulation in qdec? >> >> Thanks, Marie >&g

[Freesurfer] (no subject)

Dear FreeSurfer expects, I ran a cortical thickness analysis that revealed many significant clusters, but half of them are pretty small. Is there a possibility in qdec to display only clusters with a certain clustersize on the inflated surface? Thank you very much for your help, best wishes, Mar