I exactly tried that. I typed:
mris_preproc --fsgd <fsgdfile> \ --cache in thickness.fwhm.10.fsaverage \ --target fsaverage \ --hemi lh \ --out <path>.mgh everytime I am running this it says that my fsgd file cannot be found. So I wonder where I have to save it so that FreeSurfer can find it. Thanks for any help Marie 2012/6/6 Douglas Greve <gr...@nmr.mgh.harvard.edu> > Hi Marie, you have to pass it as a command-line option with --fsgd > doug > > > On 6/6/12 4:19 AM, Marie Schneider wrote: > > Dear FreeSurfer experts, > > I am trying to start mris_preproc, but unfortunately it doesn't find my > created fsgd file. I saved it in the foulder where you can find all > subjects data. Shall I save it somewhere else? > > Thanks for your help, > > best Marie > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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