[Freesurfer] Problem about vol2surf

2015-01-07 Thread LiuKai
Dear FS experts,I got into a trouble when used the command of mri_vol2surf.I planned to project a volume file (left hemisphere) onto the surface (lh) of the same subject. While i got nothing (value=0 for nearly all the vertexes except for a few valued vertexes on the medial surface). However, i

[Freesurfer] Export value for each vertex in mgh file

2015-05-15 Thread LiuKai
Hi dear freesurfer expert,Is there any command which can be used to export the value of each vertex of a mgh file (e.g., lh.thickness.fsaverage.mgh) and list all the values by generating a file (may be a .txt file)? Because I want to plot the values for further steps.Thank you!!kaiThe Chinese

Re: [Freesurfer] Freesurfer Digest, Vol 135, Issue 23

2015-05-16 Thread LiuKai
u, Bryan (PHTH)) >5. Re: freeview data checking for longitudinal (Martin Reuter) > 6. Manual labels in terms of anatomical regions (Andreas Werner) >7. Export value for each vertex in mgh file (LiuKai) >8. Re: Export value for each vertex in mgh file (Bruce Fischl) >9. Segm

Re: [Freesurfer] Freesurfer Digest, Vol 135, Issue 23

2015-05-17 Thread LiuKai
t; > > > Today's Topics: > >1. Re: xhemi final iteration (Douglas N Greve) >2. White Matter Corrections (Imola MacPhee) >3. Qdec not receiving keyboard input (Chris Wertz) >4. freeview data checking for longitudinal (Chiu, Bryan (PHTH)) >5.

Re: [Freesurfer] Freesurfer Digest, Vol 135, Issue 23

2015-05-18 Thread LiuKai
tudinal (Chiu, Bryan (PHTH)) >5. Re: freeview data checking for longitudinal (Martin Reuter) >6. Manual labels in terms of anatomical regions (Andreas Werner) >7. Export value for each vertex in mgh file (LiuKai) >8. Re: Export value for each vertex in mgh file (Bruce

[Freesurfer] Load a .label as a mask in tksurfer

2015-07-11 Thread LiuKai
Dear experts,Is there a way in tksurfer which could enable us to load a surface mask (e.g., lh.cortex.label) to confine the visualization of annotation files within certain cortical region? For example, now I want to confine the visualization of brain surface values within cortex (with corpus ca