[Freesurfer] Recon all clinical with multiple input scans

2023-11-13 Thread Lieshout, P.B. van (Pauline)
External Email - Use Caution Dear sir/madam, I have been trying out the new recon-all-clinical algorithm. In the FreeSurferWiki on recon-all-clinical, it is not specified if I can add multiple scans (T1, FLAIR and T2, for instance) of the same individual in the recon-all-clinic

[Freesurfer] Recon-all-clinical pipeline

2025-03-20 Thread Lieshout, P.B. van (Pauline)
External Email - Use Caution Dear sir/madam, I am implementing the recon-all-clinical pipeline on clinical MRI scans. I have done a test-run of around 70 T1-w clinical MRI scans. Processing of 9 out of 70 scans have failed. In almost all the failed processing scans, the pipeline